Supported by CCR Office of Science and Technology Resources (OSTR)

OMAL-Image Analysis

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Image Analysis Capabilities

Deconvolution Software
2D and 3D Cell Segmentation
Colocalization
Single Molecule/Cell Localization & Tracking
3D/4D Visualization
High Content Analysis
Custom Software Development

Supported Software Platforms

Arivis Vision 4D

Arivis is software for image processing, analysis, and display for working with multi-channel 2D, 3D and 4D images of almost unlimited size independent of available RAM. It includes customizable workflows for analysis for 3D /4D image analysis (cell segmentation, tracking, annotation, quantitative measurement and statistics, etc) and MATLAB and Python scripting. A shared license is available from CIT.

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Imaris

Imaris is software for image processing, analysis, and display. It provides visualization of 2D and 3/4D microscopy datasets with automated cell, spot, and surface segmentation and visualization, detection of complex objects, tracing of neurons, blood vessels (no lumen) or other filamentous structures, tracking including cell division detection, batch analysis and customized analysis powered by MatLab or Python. OMAL has one floating license and several “satellite” licenses available for short-term use. For longer-term use, licenses are available from CIT (fee applies).

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Image J/Fiji

FIJI is an open source software to use for image processing with custom acquisition, analysis, and processing plugins. Free to all users and can be downloaded onto any NIH or external computer.

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MATLAB

MATLAB® is software for customized, general purpose image and data analysis. OMAL has a floating license available to users for short term use, licenses available from CIT (fee applies)

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Huygens (Deconvolution)

Huygens is image processing software for image deconvolution and restoration, interactive analysis and volume visualization in 2D, 3D, multi-channel and time. Huygens is hosted on an OMAL server which can be accessed by trained users.

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Post Processing of Images