Image Analysis
Signals Imaging Artist
Next generation image analysis and management platform for high-content screening and cell imaging data. Quickly process, analyze, share, and store the vast volumes of data.
Cell Profiler
CellProfiler is free, open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
High-Throughput Image Processing Software (HiTIPS)
HiTIPS was developed in house at HiTIF to provide an open source software platform for advanced throughput image analysis in both live and fixed cells. For more details about HiTIPS and for instructions on how to use it, please refer to the original HiTIPS publication https://www.nature.com/articles/s41598-024-66600-1
Image Storage/Analysis
Signals Imaging Artist
Next generation image analysis and management platform for high-content screening and cell imaging data. Quickly process, analyze, share, and store the vast volumes of data.
NCI Data Management Environment
The NCI Data Management Environment (DME) offers open-ended storage and management of scientific research datasets.
If you have an NIH account, the NCI Data Vault team can give you access to DME. For access requests or any other questions, contact NCIDataVault@mail.nih.gov
Data Analysis/Visualization
R
R is ‘GNU S’, a freely available language and environment for statistical computing and graphics which provides a wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, etc.
Python
Python is a high-level, general-purpose programming language. Its design philosophy emphasizes code readability with the use of significant indentation via the off-side rule. Python is dynamically typed and garbage-collected.